I'm getting gateway timeouts when pulling all, which is probably the root cause for me (I'm guessing a moved-to-the-butt issue).
However, the actual bug is that "refresh storage" doesn't update things, because api.php returns [] for empty storage, which causes StorageRequest to get passed a null value all the way from ApiRequest.getJSONString, and aborting the update before the arrays are cleared.
Doing another pull all from the CLI (since relay browser doesn't get the button) fixes it, because the game still returns the message that triggers clearing.
However, the actual bug is that "refresh storage" doesn't update things, because api.php returns [] for empty storage, which causes StorageRequest to get passed a null value all the way from ApiRequest.getJSONString, and aborting the update before the arrays are cleared.
Doing another pull all from the CLI (since relay browser doesn't get the button) fixes it, because the game still returns the message that triggers clearing.