If I understand the 'useCWDasROOT' option correctly I would have to set that every time I update mafia.
I went with a symbolic link instead. Easy way of doing that was to first copy the mafia data from the .kolmafia folder to the desired folder in Dropbox.
Then select my dropbox/KOLMafia folder...
I use both Windows and Ubuntu. When I run Mafia in Ubuntu it creates a .kolmafia folder in my home directory and saves everything, but when I am on windows it creates all the folders in the subdirectory that I am running the Jar from.
I am using dropbox to sync between computers and currently...